Study of the Mechanism of Action of Fructus Meliae Toosendan in the Treatment of Colorectal Cancer Based on GEO Database, Network Pharmacology and Molecular Docking
DOI: 10.23977/medcm.2024.060407 | Downloads: 25 | Views: 726
Author(s)
Zhaoshuang Li 1,2, Qinyou Ren 2, Bizhu Geng 2, Yue Hao 1,2, Xinya Wen 1,2, Liang Cao 2
Affiliation(s)
1 Shaanxi University of Chinese Medicine, Shiji Avenue, Xianyang, Shaanxi, 712000, China
2 The Second Affiliated Hospital of Air Force Medical University, Xinsi Avenue, Xi'an, Shaanxi, 710000, China
Corresponding Author
Liang CaoABSTRACT
This study aimed to elucidate the potential mechanism of action of Fructus Meliae Toosendan (FMT) in the treatment of Colorectal Cancer (CRC). We searched the Traditional Chinese Medicine System Pharmacology (TCMSP) database for the main active ingredients of FMT and their corresponding targets. Using the Gene Expression Omnibus (GEO) database, we organized the CRC therapeutic targets and utilized the Venny 2.1.0 platform to draw Venn diagrams. We constructed disease-component-target network diagrams and core genes using Cytoscape. Based on the co-acting targets, we performed Gene Ontology (GO) function enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses. Key targets and active ingredients were verified through molecular docking. We identified nine potentially active compounds corresponding to 78 potential drug targets. By mapping with 3,269 CRC disease targets, we obtained the top 10 core targets through topology analysis, including MYC, BCL2, CCND1, IL6, FOS, PLAU, CCNB1, IGFBP3, RUNX2, and CAV1. Enrichment analysis revealed that the primary therapeutic pathways for CRC include the AGE-RAGE signaling pathway in diabetic complications, the p53 signaling pathway, the HIF-1 signaling pathway, among others. Molecular docking results showed binding energies of Quercetin with BCL2, MYC, and CCND1, as well as Medioresil and Balanophonin with BCL2, were less than -7.0 kcal/mol, suggesting strong binding abilities between the receptors and ligands. Quercetin, Medioresil, and Balanophonin, active ingredients in FMT, primarily engage in mediating the p53 and HIF-1 signaling pathways to treat CRC by regulating core gene targets such as MYC, BCL2, CCND1, and IL6. This study provides insights into the potential mechanism of FMT for CRC treatment and offers guidance for subsequent pharmacological research and clinical applications.
KEYWORDS
FMT, CRC, Network pharmacology, Molecular docking, Antitumor effectCITE THIS PAPER
Zhaoshuang Li, Qinyou Ren, Bizhu Geng, Yue Hao, Xinya Wen, Liang Cao, Study of the Mechanism of Action of Fructus Meliae Toosendan in the Treatment of Colorectal Cancer Based on GEO Database, Network Pharmacology and Molecular Docking. MEDS Chinese Medicine (2024) Vol. 6: 49-57. DOI: http://dx.doi.org/10.23977/medcm.2024.060407.
REFERENCES
[1] Siegel, R. L., Wagle, N. S., Cercek, A., Smith, R. A., & Jemal, A. (2023). Colorectal cancer statistics, 2023. CA Cancer J Clin, 73(3), 233-254.
[2] Patel, S. G., Karlitz, J. J., Yen, T., Lieu, C. H., & Boland, C. R. (2022). The rising tide of early-onset colorectal cancer: a comprehensive review of epidemiology, clinical features, biology, risk factors, prevention, and early detection. Lancet Gastroenterol Hepatol, 7(3), 262-274.
[3] Eng, C., & Hochster, H. (2021). Early-Onset Colorectal Cancer: The Mystery Remains. J Natl Cancer Inst, 113(12), 1608-1610.
[4] Niu, C., Zhang, J., & Okolo, P. (2023). Greasing the Wheels of Pharmacotherapy for Colorectal Cancer: the Role of Natural Polyphenols. Curr Nutr Rep, 12(4), 662-678.
[5] Zhou, E., & Rifkin, S. (2021). Colorectal Cancer and Diet: Risk Versus Prevention, Is Diet an Intervention? Gastroenterol Clin North Am, 50(1), 101-111.
[6] Wei, J., Liu, Z., He, J., Liu, Q., Lu, Y., He, S., Yuan, B., Zhang, J., & Ding, Y. (2022). Traditional Chinese medicine reverses cancer multidrug resistance and its mechanism. Clin Transl Oncol, 24(3), 471-482.
[7] Xiang, Y., Guo, Z., Zhu, P., Chen, J., & Huang, Y. (2019). Traditional Chinese medicine as a cancer treatment: Modern perspectives of ancient but advanced science. Cancer Med, 8(5), 1958-1975.
[8] Noor, F., Asif, M., Ashfaq, U. A., Qasim, M., & Tahir, U. Q. M. (2023). Machine learning for synergistic network pharmacology: a comprehensive overview. Brief Bioinform, 24(3).
[9] Zhao, L., Zhang, H., Li, N., Chen, J., Xu, H., Wang, Y., & Liang, Q. (2023). Network pharmacology, a promising approach to reveal the pharmacology mechanism of Chinese medicine formula. J Ethnopharmacol, 309, 116306.
[10] Ru, J., Li, P., Wang, J., Zhou, W., Li, B., Huang, C., Li, P., Guo, Z., Tao, W., Yang, Y., Xu, X., Li, Y., Wang, Y., & Yang, L. (2014). TCMSP: a database of systems pharmacology for drug discovery from herbal medicines. J Cheminform, 6, 13.
[11] Kim, S., Chen, J., Cheng, T., Gindulyte, A., He, J., He, S., Li, Q., Shoemaker, B. A., Thiessen, P. A., Yu, B., Zaslavsky, L., Zhang, J., & Bolton, E. E. (2021). PubChem in 2021: new data content and improved web interfaces. Nucleic Acids Res, 49(D1), D1388-D1395.
[12] Barrett, T., Wilhite, S. E., Ledoux, P., Evangelista, C., Kim, I. F., Tomashevsky, M., Marshall, K. A., Phillippy, K. H., Sherman, P. M., Holko, M., Yefanov, A., Lee, H., Zhang, N., Robertson, C. L., Serova, N., Davis, S., & Soboleva, A. (2013). NCBI GEO: archive for functional genomics data sets--update. Nucleic Acids Res, 41(Database issue), D991-D995.
[13] Buccafusca, G., Proserpio, I., Tralongo, A. C., Rametta, G. S., & Tralongo, P. (2019). Early colorectal cancer: diagnosis, treatment and survivorship care. Crit Rev Oncol Hematol, 136, 20-30.
[14] Abedizadeh, R., Majidi, F., Khorasani, H. R., Abedi, H., & Sabour, D. (2024). Colorectal cancer: a comprehensive review of carcinogenesis, diagnosis, and novel strategies for classified treatments. Cancer Metastasis Rev, 43(2), 729-753.
[15] Ganesh, K., Stadler, Z. K., Cercek, A., Mendelsohn, R. B., Shia, J., Segal, N. H., & Diaz, L. J. (2019). Immunotherapy in colorectal cancer: rationale, challenges and potential. Nat Rev Gastroenterol Hepatol, 16(6), 361-375.
[16] Wang, K., Chen, Q., Shao, Y., Yin, S., Liu, C., Liu, Y., Wang, R., Wang, T., Qiu, Y., & Yu, H. (2021). Anticancer activities of TCM and their active components against tumor metastasis. Biomed Pharmacother, 133, 111044.
[17] Yang, Y., Liu, Z., Lyu, H., Guo, X., Jiang, H., Liu, L., & Chen, D. (2023). Traditional Chinese medicine-induced treatment in colitis-associated colorectal cancer. Chin Med J (Engl), 136(10), 1249-1250.
[18] Li, R., Zhang, T., Yan, S. H., Yan, Y. Z., Ding, Y. C., Wang, Y. S., & Yang, Y. F. (2024). Chinese Medicine Combined with Adjuvant Chemotherapy for Improving Myelosuppression in Colorectal Cancer Patients: A Systematic Review and Network Meta-Analysis. Chin J Integr Med, 30(7), 643-652.
[19] Chang, H., Wang, C., Gong, L., Zhang, Y., Liang, C., & Liu, H. (2023). An overview of Fructus Meliae Toosendan: Botany, traditional uses, phytochemistry, pharmacology and toxicology. Biomed Pharmacother, 157, 113795.
[20] Y.P. Tian, J.X. Cui, M.J. Ren.(2017). Toosendan aqueous extract inhibits proliferation of lung cancer A549 cells in vitro. Journal of anatomy, 40(03), 258-261.
Downloads: | 8498 |
---|---|
Visits: | 476267 |
Sponsors, Associates, and Links
-
MEDS Clinical Medicine
-
Journal of Neurobiology and Genetics
-
Medical Imaging and Nuclear Medicine
-
Bacterial Genetics and Ecology
-
Transactions on Cancer
-
Journal of Biophysics and Ecology
-
Journal of Animal Science and Veterinary
-
Academic Journal of Biochemistry and Molecular Biology
-
Transactions on Cell and Developmental Biology
-
Rehabilitation Engineering & Assistive Technology
-
Orthopaedics and Sports Medicine
-
Hematology and Stem Cell
-
Journal of Intelligent Informatics and Biomedical Engineering
-
MEDS Basic Medicine
-
MEDS Stomatology
-
MEDS Public Health and Preventive Medicine
-
Journal of Enzyme Engineering
-
Advances in Industrial Pharmacy and Pharmaceutical Sciences
-
Bacteriology and Microbiology
-
Advances in Physiology and Pathophysiology
-
Journal of Vision and Ophthalmology
-
Frontiers of Obstetrics and Gynecology
-
Digestive Disease and Diabetes
-
Advances in Immunology and Vaccines
-
Nanomedicine and Drug Delivery
-
Cardiology and Vascular System
-
Pediatrics and Child Health
-
Journal of Reproductive Medicine and Contraception
-
Journal of Respiratory and Lung Disease
-
Journal of Bioinformatics and Biomedicine